Insertion junction: CLIP2.020876_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.020876
Chromosome:chromosome 10
Location:2186952
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g433550 DNL4,LIG4,LIG2 (1 of 21) IPR001357 - BRCT domain; DNA ligase 4 CDS
Cre10.g801121 (1 of 1) PTHR10459:SF7 - DNA LIGASE 4 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCAGGTGCACCCAGCGACCACCCAGCAGGTCCTGGTCCACCGCCACCTGC
Internal bar code:CAGCATCGCATACGTCATAAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1067
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:ACTTAGTGGGCGGGATTTGG
Suggested primer 2:CTCCTACCTGCGGGCATATG