Insertion junction: CLIP2.020927_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.020927
Chromosome:chromosome 17
Location:748882
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g701100 CPK8 (1 of 1) 2.7.1.83 - Pseudouridine kinase; putative carbohydrate kinase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCTGAGCGGGCTTCGTGCTGGTTTAAAATGCGGTGTGCTGGTTGATGCC
Internal bar code:AGACGAACTTGAGGTCGGGTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:164
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:TCAGTGTCAGTGGCGGTAAC
Suggested primer 2:AGAGTGGGGTTTTAGGCGTG