Insertion junction: CLIP2.020927_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.020927
Chromosome:chromosome 17
Location:748907
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g701100 CPK8 (1 of 1) 2.7.1.83 - Pseudouridine kinase; putative carbohydrate kinase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGTCCGTGTGTGACTGCAGGCACACTCGGTGTGGTGCTCACACTGGGC
Internal bar code:TAAGCAGGAGAATTCTCGAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1205
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:AGAGTGGGGTTTTAGGCGTG
Suggested primer 2:TCAGTGTCAGTGGCGGTAAC