Insertion junction: CLIP2.020972_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.020972
Chromosome:chromosome 1
Location:2898329
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g018050 NEF1 (1 of 1) PTHR35313//PTHR35313:SF1 - FAMILY NOT NAMED // NO EXINE FORMATION 1; NEF1-like protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTATGAGAGCCGCAGCCTGCGAGAGTACATGGTGTTCGTGGTTGGCGC
Internal bar code:TCGCGCATGGGAGCATTTAAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1067
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:ACACCAGACTGCATGCGTAA
Suggested primer 2:CCTACATCTCCATCACGCCC