Insertion junction: CLIP2.020979_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.020979
Chromosome:chromosome 13
Location:2495535
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g579850 (1 of 1) PTHR10984//PTHR10984:SF25 - ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN // ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 3 CDS
Cre13.g579901 DEG6 (1 of 2) PTHR22939:SF67 - PROTEASE DO-LIKE 9; Deg protease 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCAAGAAGAAGATGGAGCTGGGCAAGTTCTCTTAAGTGCATAGAGCTAG
Internal bar code:TGTTCGGTAGAAGTAATGGCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1641
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TTCATTCTTGCCCCATCCCC
Suggested primer 2:CCCTTTTGCATGGGGTTTGG