Insertion junction: CLIP2.020984_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.020984
Chromosome:chromosome 17
Location:3186844
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g721150 CDS
lncRNA_TCONS_00163097 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGGGCTGAGGGCGACGAGCAGAACCAGCCCAGCAGCAGCTCTGGGCCC
Internal bar code:CTGTAGACTCACAGTTGTCGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1662
LEAP-Seq percent confirming:94.7368
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:ACACTCTTTCTACAGCCGCC
Suggested primer 2:TGCTGGTTGTGCTCCATAGG