Insertion junction: CLIP2.021056_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.021056
Chromosome:chromosome 13
Location:4864069
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g605100 PDE20 (1 of 1) PF00233//PF01590 - 3'5'-cyclic nucleotide phosphodiesterase (PDEase_I) // GAF domain (GAF); 3'%252C5'-cyclic-nucleotide phosphodiesterase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAGGTTTTGGTGGGAGGAAGGCCGTGGGAGGAGAGGCGTGGGAGGAGAG
Internal bar code:ATGTCGACAATGTGGCGTTTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:246
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCACGTCTGAGACCTGTC
Suggested primer 2:TTATGATTGCAACCCCGCCT