Insertion junction: CLIP2.021099_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.021099
Chromosome:chromosome 2
Location:6536259
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g389050 CNX5,MAW4 (1 of 2) PTHR16861//PTHR16861:SF4 - GLYCOPROTEIN 38 // PODOPLANIN; Membrane-associated hydroxyproline-rich glycoprotein 4 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTTCTCAATCATGCCGCACCGCAATGCCATTTGCCACCCGCGCGCACCA
Internal bar code:AGCAGACGATACCCGACATGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1935
LEAP-Seq percent confirming:96.8254
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:63

Suggested primers for confirmation by PCR

Suggested primer 1:GCGACGGTTCAGGGATGTTA
Suggested primer 2:CCAACGGCTTGTGACCTACT