Insertion junction: CLIP2.021136_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.021136
Chromosome:chromosome 1
Location:1441950
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g007651 PUS10 (1 of 1) 5.4.99.27 - tRNA pseudouridine(13) synthase / tRNA Psi(13) synthase; RNA pseudouridine synthase 3'UTR
Cre01.g007700 (1 of 1) 3.4.11.1//3.4.11.5 - Leucyl aminopeptidase / Peptidase S // Prolyl aminopeptidase / Proline iminopeptidase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCCTTGGCCGCCTGTTGCGCCTGCGCCAGCGCCCACTCCGACAGCAGC
Internal bar code:TAAGCTTAAGGAGGGGTTTCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:259
LEAP-Seq percent confirming:11.5385
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CTCAGGCAAAGTCGGTGAGT
Suggested primer 2:ATGTTGGTTGTTGTGAGCGC