Insertion junction: CLIP2.021188_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.021188
Chromosome:chromosome 3
Location:6794471
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g197050 HTV2 (1 of 35) K11253 - histone H3 (H3); Histone H3 variant intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTCACATGTGCACCGCGCCGCAGCACTTACGGCCACCTTATATGGTCCT
Internal bar code:GTGTAAGCTTCGAGAGAGCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3355
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:109
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:109

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCGGGCGTCCATGTATAT
Suggested primer 2:TCAGGCCCAAACGCAAATTG