Insertion junction: CLIP2.021209_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.021209
Chromosome:chromosome 8
Location:204396
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g358553 (1 of 1) IPR000104//IPR001810//IPR006553 - Antifreeze protein, type I // F-box domain // Leucine-rich repeat, cysteine-containing subtype intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGGCCAGGTGGAGGCCGGGGGGCCGATGGCAGTTGTGGACCGGGCAGT
Internal bar code:GGCGCCGGGTAAGGATATTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1714
LEAP-Seq percent confirming:96.7742
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCGGAGCCAGACAATCAC
Suggested primer 2:CCCACCCCTTACCCAAATCC