Insertion junction: CLIP2.021241_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.021241
Chromosome:chromosome 3
Location:5720527
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g187000 (1 of 1) PF12325//PF12329 - TATA element modulatory factor 1 TATA binding (TMF_TATA_bd) // TATA element modulatory factor 1 DNA binding (TMF_DNA_bd) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAATCATGAATGTAACCCCGCCCACGCAACCTTCCACCCCGCCCCCGAGC
Internal bar code:TCTAGAGTTGGTTGCTAGGAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1793
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCGAAGAAGCAGGTGGAC
Suggested primer 2:TGCATAACCCGCTGTAGCAA