Insertion junction: CLIP2.021293_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.021293
Chromosome:chromosome 16
Location:730009
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g691050 (1 of 1) PF08381 - Transcription factor regulating root and shoot growth via Pin3 (BRX) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCCTACACGGCCACAGCACCGCCCCTGCGCCCCCCCATCCGCACCCAC
Internal bar code:ACGGTCAAATCGTCTTTTAAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:698
LEAP-Seq percent confirming:37.5
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:ACTCGTACTTCCAGGGCTCT
Suggested primer 2:AACGCTGAAAGGAAGGGAGG