Insertion junction: CLIP2.021381_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.021381
Chromosome:chromosome 13
Location:1710327
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g574300 (1 of 4) IPR000719//IPR001245//IPR002290//IPR006189//IPR011009//IPR020635 - Protein kinase domain // Serine-threonine/tyrosine-protein kinase catalytic domain // Serine/threonine/dual specificity protein kinase, catalytic domain // CHASE domain // Protein kinase-like domain // Tyrosine-protein kinase, catalytic domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCCGTTGGTGACCTCATCATAGTTCACCAGCACCGTCAGCAAGCCCCA
Internal bar code:AAGATTTTTAGTTTAGGCTACG

Confirmation - LEAP-Seq

LEAP-Seq distance:1462
LEAP-Seq percent confirming:45.8333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:ATTAGCCCTGCCCCTGAAAC
Suggested primer 2:AAACCACAGCAGCGTATGGA