Insertion junction: CLIP2.021587_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.021587
Chromosome:chromosome 3
Location:7697881
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g203730 DEGO1,DEG12 Inactive Deg protease; (1 of 4) PTHR22939//PTHR22939:SF83 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 2, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGGAACGAGTTTAGGGGGCACACGCCCGAGACGCGGGAGGGTGTTGTAC
Internal bar code:ATCCCATGGAGGGGTGGCGCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:901
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CTACTGCCGATCAGCTCCAG
Suggested primer 2:GGAGAGGGCATACGTACACG