Insertion junction: CLIP2.021593_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.021593
Chromosome:chromosome 3
Location:7934810
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g202300 (1 of 3) IPR000104//IPR001859 - Antifreeze protein, type I // Trypanosoma cruzi ribosomal protein P2-like CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGACGGCGGTGCAGTCAAGGGCTACCAGCCACGTCGGCGGCGTGGCGCC
Internal bar code:CCACTCCCAGGAGGAATGTGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:847
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GATGCTGGTAGTCTACGCCC
Suggested primer 2:GCTGACATGCCGTACTGGAT