Insertion junction: CLIP2.021641_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.021641
Chromosome:chromosome 17
Location:1442914
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g706450 LIC3 (1 of 1) IPR000104//IPR006029//IPR006201//IPR006202 - Antifreeze protein, type I // Neurotransmitter-gated ion-channel transmembrane domain // Neurotransmitter-gated ion-channel // Neurotransmitter-gated ion-channel ligand-binding domain; Ligand-gated ion channel intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGTGAAGGACGTGGCTTGCCGTCGGGCGGTGCGCATTGCATGCGCATTA
Internal bar code:GACTGGAATTTTGAGGTTCGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:154
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TGGGTGGCACCTCTTGTTTT
Suggested primer 2:TCGCCCTTACACAGACACAC