Insertion junction: CLIP2.021651_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.021651
Chromosome:chromosome 10
Location:2316145
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g434400 PF6 (1 of 1) K19090 - CRISPR-associated protein Cas5t (cas5t); Flagellar central pair-associated protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGGCGCGCGTGCTGTGCCCCGACGGCAGCGTCAGCGAGCGGCTGGACGC
Internal bar code:CGGTTCTCTACATATTTACCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1297
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CAACCGGGTCCTCCTTCTTC
Suggested primer 2:CGAAGACGAGGATGAGGACG