Insertion junction: CLIP2.021726_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.021726
Chromosome:chromosome 13
Location:775665
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g566900 (1 of 1) PTHR11289:SF0 - BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCGACGCCGCGGCGGCCTCCGTCAGCGCCCGCGTCAGTGCCAGCGCAG
Internal bar code:AAACTTGTGGCAGGATCATAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1040
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTTGCTGTTGTTGCTGCT
Suggested primer 2:TGGGTTTTCATTTGCCAGCG