Insertion junction: CLIP2.021743_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.021743
Chromosome:chromosome 8
Location:3141267
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g376200 (1 of 1) IPR000104//IPR013026//IPR019734 - Antifreeze protein, type I // Tetratricopeptide repeat-containing domain // Tetratricopeptide repeat intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAATGAGCGCATCGCCCTGGACGACGCCGCGACCGCTGCCTCCGACGTCA
Internal bar code:ATTAGGGTGATGATGTCAATCA

Confirmation - LEAP-Seq

LEAP-Seq distance:939
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGGCGGTTGGAGACTAA
Suggested primer 2:GGACTAGTGCAATTGGGCCT