Insertion junction: CLIP2.021762_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.021762
Chromosome:chromosome 10
Location:5240109
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g456250 TRX16,TRX25,TRL11 (1 of 4) PTHR10438//PTHR10438:SF255 - THIOREDOXIN // THIOREDOXIN M4, CHLOROPLASTIC; Thioredoxin-like protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCCTCCTCAATTGAGATAGACGCGGCAGAGCCAGTGCCGGTCGCGTTTG
Internal bar code:GGGTATACGCCTGTCGTAAAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2088
LEAP-Seq percent confirming:96.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TATCTTCTTGGGCGCCGTTT
Suggested primer 2:GATGGAGACGCAGCATCGTA