Insertion junction: CLIP2.021804_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.021804
Chromosome:chromosome 6
Location:6939295
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00081283

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTGGTCGTATGGTGTAGCGGTGATCACTCTGGACTTTGAATCCAGCAA
Internal bar code:GAGCAGTGAATCAGCGCCTGGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2935
LEAP-Seq percent confirming:95.8678
LEAP-Seq n confirming:116
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:121

Suggested primers for confirmation by PCR

Suggested primer 1:GCCAGCATCCACAGTACCTT
Suggested primer 2:TCTATGTACCACCGAACGCG