Insertion junction: CLIP2.021810_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.021810
Chromosome:chromosome 5
Location:964497
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g247000 (1 of 1) PF00439//PF00628//PF02791 - Bromodomain (Bromodomain) // PHD-finger (PHD) // DDT domain (DDT) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCCTTCATATGCTGTGTTTTTCTCGGGCTGTGTCCCACCCGCCAACCC
Internal bar code:GGACGTCATTGGTACCTAGAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1199
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TGTGTGTGTATTCCGCCCTC
Suggested primer 2:CCTACCCTCCCATGCTCTCT