Insertion junction: CLIP2.021819_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.021819
Chromosome:chromosome 3
Location:2724326
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g800310 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTCCTCCGTCGTCCCTGCCTACGCCTCCCAGCCCGGAGCCTCCGTCGC
Internal bar code:TTGTATACACTTCTACCCGGCC

Confirmation - LEAP-Seq

LEAP-Seq distance:959
LEAP-Seq percent confirming:7.14286
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGATAAGGAGGTGAGGGT
Suggested primer 2:GTCGCCAGCTCCTCCATATC