Insertion junction: CLIP2.021844_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.021844
Chromosome:chromosome 9
Location:3154701
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g394362 (1 of 2) IPR000104//IPR001005//IPR009057 - Antifreeze protein, type I // SANT/Myb domain // Homeodomain-like CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCTCTGGTCCGTAGCCGCCAGCCGGTCCGTGTGATGAACGCATGGCCTG
Internal bar code:GGTGGTTTTCGGCTGGCAGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3405
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTACCGGTCCCGTGATTC
Suggested primer 2:CTGACACATGGCATGCGATG