Insertion junction: CLIP2.021919_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.021919
Chromosome:chromosome 8
Location:2048703
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g368900 TSA2 (1 of 1) PTHR11777//PTHR11777:SF14 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED; Alanyl-tRNA-synthetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAACATGCGCTGCCCCTGTGCCACGGTGAAGCAGTGCTTGCTGGGTTGA
Internal bar code:TTTATAATCCGAAGTCGTTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2145
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:CGCACACTCCTCAGTCTGTT
Suggested primer 2:TCAAGCGGGTTGTCTTCTCC