Insertion junction: CLIP2.021919_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.021919
Chromosome:chromosome 8
Location:2048705
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g368900 TSA2 (1 of 1) PTHR11777//PTHR11777:SF14 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED; Alanyl-tRNA-synthetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACGCACTTGACTCACCCGACGTTCGCCAACTCTGCCCACCCCGGGAATC
Internal bar code:TTTATAATCCGAAGTCGTTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1166
LEAP-Seq percent confirming:94.7368
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TCAAGCGGGTTGTCTTCTCC
Suggested primer 2:CGCACACTCCTCAGTCTGTT