Insertion junction: CLIP2.021990_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.021990
Chromosome:chromosome 13
Location:3481711
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g587500 AOF8 (1 of 2) 1.3.5.5 - 15-cis-phytoene desaturase / Plant-type phytoene desaturase; Flavin-containing amine oxidase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGGGGTTCCAGAACCTGTGACGGATGCAAAATGGTGTTGCACCGCTTG
Internal bar code:TAGATGCATCTGGGGGTCTACC

Confirmation - LEAP-Seq

LEAP-Seq distance:1011
LEAP-Seq percent confirming:82.1429
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:TGGTATCAGGTGAGGGAGGG
Suggested primer 2:CTGACCGTATGCGCTCATCT