Insertion junction: CLIP2.022072_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.022072
Chromosome:chromosome 9
Location:3324078
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g395362 (1 of 4) 1.13.11.75 - All-trans-8'-apo-beta-carotenal 15,15'-oxygenase / 8'-apo-beta-carotenal 15,15'-oxygenase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCCTGCCCAACCACCGCGCTTTGGGCAGGGATGATGGGTTTGGGTTCT
Internal bar code:TTGAGTAGGATTGTCAGAGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:102
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTTAGACGGGGAGCACAA
Suggested primer 2:GTGCGCTTGGGAATGAAGAC