Insertion junction: CLIP2.022098_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.022098
Chromosome:chromosome 6
Location:2769201
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g800645 (1 of 35) K11253 - histone H3 (H3) CDS
lncRNA_TCONS_00027170 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCTAGCCCAAGGCCGAGAAGGCCGCCAAGAAGGCCAAGAAGGAGCCTT
Internal bar code:CCGACAGTCTTCGGTGTTGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:750
LEAP-Seq percent confirming:36.8421
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TGGGGATTTCTGGGCATGAC
Suggested primer 2:TTGCCCTTCTTCAGGTAGCG