Insertion junction: CLIP2.022159_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.022159
Chromosome:chromosome 1
Location:5696035
Confidence (%):63
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00249475

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTGAGAGGGCCCGGCGCTCGCCGCAGCTAAACCTTGACGCAAGCGCAG
Internal bar code:TCCAAGAACCATCGGCTAGGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1069
LEAP-Seq percent confirming:2.32558
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:42
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTTGTGTGGTCACCAGCT
Suggested primer 2:TTGAGCTGCTCCTTCAGGTG