Insertion junction: CLIP2.022287_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.022287
Chromosome:chromosome 16
Location:1581232
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g653700 (1 of 1) PTHR10972//PTHR10972:SF71 - OXYSTEROL-BINDING PROTEIN-RELATED // OXYSTEROL-BINDING PROTEIN 5'UTR_intron
Cre16.g653705 (1 of 1) PTHR14273//PTHR14273:SF0 - FAMILY NOT NAMED // LYR MOTIF-CONTAINING PROTEIN 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGACTGAGTGAAACATGTATAGCCGCTCGACACGTCATATCTTTCAAC
Internal bar code:TTGTTCACACGTGCGACGGTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:2380
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:ATGTCGGCTTTGGAGTTCGT
Suggested primer 2:AGTTGCGACGCTAACCTTGA