Insertion junction: CLIP2.022308_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.022308
Chromosome:chromosome 3
Location:5512176
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184900 (1 of 1) IPR027417//IPR029060 - P-loop containing nucleoside triphosphate hydrolase // PIN domain-like CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCATCTGCTGGCTAGCGGCGGCGGCGGCGAGCAGGCGGGCCCGGCGCCT
Internal bar code:GGCACGCGCTAAGGGAATATGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2063
LEAP-Seq percent confirming:62.963
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCACTCACGTCTTTTGCG
Suggested primer 2:GTTGCTTCTGTCCTGGCTCT