Insertion junction: CLIP2.022367_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.022367
Chromosome:chromosome 9
Location:3337126
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g395473 intron
lncRNA_TCONS_00132474 intron
lncRNA_TCONS_00132476 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCGTTTACCCAGGCGGGGGTTTGCAGGGCACAGGGAACGGGAGGTGAAG
Internal bar code:AATGTTATCTACCCTATTTGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2229
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TTGGGTACACGGTAGTTGGC
Suggested primer 2:TGGCCGGTGTTGTTGATGAT