Insertion junction: CLIP2.022526_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.022526
Chromosome:chromosome 3
Location:5776104
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g187550 (1 of 1) PF04858 - TH1 protein (TH1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTTGCCGGCGCGCTGCTGCGACTGCTGCTGGCGGCGGGCGTGCGCGCC
Internal bar code:ATAGCGTTCATGCTTCGTAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:2707
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CGTGTGTGTGATGCTTGCAA
Suggested primer 2:GGTTCTTTGTGCTGCAGGTG