Insertion junction: CLIP2.022558_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.022558
Chromosome:chromosome 13
Location:799662
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g567050 (1 of 1) PF00078//PF05869 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // DNA N-6-adenine-methyltransferase (Dam) (Dam) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTGTCGGGCCGTCGGCGTTCGAGTTAGCTTGTTGGCTGCGCTTTGGTTG
Internal bar code:CATTCTCGGAGTGGTATTTAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1429
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:CCGGTTCCTGAGTGAATGCT
Suggested primer 2:GCCTCTAAGCGAGCTTCCAT