Insertion junction: CLIP2.022645_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.022645
Chromosome:chromosome 9
Location:6484240
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g415400 (1 of 1) PF08314 - Secretory pathway protein Sec39 (Sec39) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCTGTAAACGATATGGCCTGTGACGCGCCCATGTGGGTTCACACAAGG
Internal bar code:ATTCTTTCCGAACCTGCTATCT

Confirmation - LEAP-Seq

LEAP-Seq distance:3398
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:TTCACGTGCCTCAGCTGAAT
Suggested primer 2:AGCTGCTGGGAATGCTAAGG