Insertion junction: CLIP2.022859_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.022859
Chromosome:chromosome 16
Location:543682
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g692550 MSH4 DNA mismatch repair protein, MutS homolog; (1 of 1) K08740 - DNA mismatch repair protein MSH4 (MSH4) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGGGCTAGTATCTACCCCTCCCCTCCCCTCCCCACCCCGCCCACCTCA
Internal bar code:TATCCACGATCAGAATCTAAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:668
LEAP-Seq percent confirming:93.3333
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:TGACAGGTACGCCAGGAGTA
Suggested primer 2:AGCACATCTTGTCCAGGTCG