Insertion junction: CLIP2.022875_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.022875
Chromosome:chromosome 3
Location:4774554
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177800 (1 of 10) PTHR31867//PTHR31867:SF1 - FAMILY NOT NAMED // EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACACCCTCCCCTCACGTCCCCTTGCCCACCCTTTCTGCTCCCACCTCGC
Internal bar code:ACTTCCTGCCAAGTGGGAATAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3930
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:51
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTCTTGGGAGTCCAGCTG
Suggested primer 2:TTTGAAAAGGCGCCATCTGC