Insertion junction: CLIP2.023083_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.023083
Chromosome:chromosome 9
Location:1479498
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00140651

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTTCTAGGAAATTTCTTCGATTAAAATTTTGATAAGGAAAAGGACGGAT
Internal bar code:GGGCCCAGCGCGAAAGTTTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1823
LEAP-Seq percent confirming:45.5224
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:73
LEAP-Seq n unique pos:134

Suggested primers for confirmation by PCR

Suggested primer 1:TCACGAGTTTTCCCGGAGTG
Suggested primer 2:CACAAAGTCCAACACCAGCG