Insertion junction: CLIP2.023098_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.023098
Chromosome:chromosome 7
Location:1697555
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g325711 (1 of 2) K19363 - lipopolysaccharide-induced tumor necrosis factor-alpha factor (LITAF) outside_mRNA
Cre07.g800783 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGAGATCCCGCCCACACAGCTGACGCCGCCGCAGCCAGGCGTCAACCCCG
Internal bar code:TCCACCGGCACAATCTTGAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2449
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:TATACCCCGGACTCAGCACA
Suggested primer 2:TTTGGCAGGAGGTAAGCTGG