Insertion junction: CLIP2.023208_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.023208
Chromosome:chromosome 13
Location:4134244
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g591150 HTA38,HTA22 Histone H2A; (1 of 30) K11251 - histone H2A (H2A) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGAAGAACCGCATCGTTCCCCGCCACATTCAGCTGGCCATTCGCAACGA
Internal bar code:GGGGGTTGTTGCGGATATGAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1597
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGTTGACCCCCTTCTTCC
Suggested primer 2:TCCTTGGCAGCCTTCTTAGC