Insertion junction: CLIP2.023210_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.023210
Chromosome:chromosome 6
Location:3848498
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278181 (1 of 4) IPR000104//IPR001471//IPR016177 - Antifreeze protein, type I // AP2/ERF domain // DNA-binding domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGTCACGGACGTGCCATATACACACCCCCGACACGCGTACTGCGCCCGA
Internal bar code:ACCAGGCTTATCTGTGAGGGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1524
LEAP-Seq percent confirming:85.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGGAGAGTCCACCGGAGT
Suggested primer 2:TCCAGGGATTCATGAACGCC