Insertion junction: CLIP2.023214_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.023214
Chromosome:chromosome 17
Location:1162579
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g704300 FAP47 Flagellar Associated Protein 47; (1 of 1) PTHR23053//PTHR23053:SF2 - DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 // PRIMARY CILIARY DYSKINESIA PROTEIN 1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTGATCCTGTCAAAGACACTGGTGGACTTCGGGACAAAGATCGTGATCC
Internal bar code:TCTAGTGATTAAGCCTTTTGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:3049
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGAGCTCCAGGTTGTCGT
Suggested primer 2:GGTTATGCCTACGCGCTTTG