Insertion junction: CLIP2.023357_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.023357
Chromosome:chromosome 3
Location:6180901
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g191200 RME3 (1 of 3) K06236 - collagen, type I/II/III/V/XI/XXIV/XXVII, alpha (COL1AS); RNA methylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGCTGCATCACGCTTCAACATCGTCACGCTCACACACCCCGTTGTGCT
Internal bar code:TCCAGGCCCTTCGAACAGATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:289
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TCCGTACCTCCTGCTAGCTT
Suggested primer 2:TCCGCTATCCTCACCATTGC