Insertion junction: CLIP2.023415_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.023415
Chromosome:chromosome 1
Location:2548299
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g015100 CSB5 (1 of 70) PF07282 - Putative transposase DNA-binding domain (OrfB_Zn_ribbon); {"Probable transposon-derived protein of Chlamydomonas-Specific family B intron
Cre01.g015103 Solute-binding protein-like adenylate cyclase; (1 of 7) PF00211//PF13416 - Adenylate and Guanylate cyclase catalytic domain (Guanylate_cyc) // Bacterial extracellular solute-binding protein (SBP_bac_8) 3'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACCCACCCACCTTGGAGGTCTTGTATTCATCGATGATGAACACATGCTT
Internal bar code:CTCTGTGAAGTTGAGAAATACC

Confirmation - LEAP-Seq

LEAP-Seq distance:5391
LEAP-Seq percent confirming:91.4286
LEAP-Seq n confirming:64
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:70

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTGTGAACGTTTTGCCAT
Suggested primer 2:CGTTATCAACCCAGCCACCT