Insertion junction: CLIP2.023452_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.023452
Chromosome:chromosome 12
Location:4727357
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g522850 HEL55 (1 of 1) K12835 - ATP-dependent RNA helicase DDX42 (DDX42, SF3B125); DEAD/DEAH box helicase similar to Eukaryotic Initiation Factor 4A intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATGTGTGTGTGTGTGGGGGGGGGGGAGAGGTGATGGTGGGCGGATGGTG
Internal bar code:CTTCAGAGGAGCGGGAGGTAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:423
LEAP-Seq percent confirming:56.25
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCTGCTGCCCGTATCATA
Suggested primer 2:CTACTCACAACCCCACCACC