Insertion junction: CLIP2.023590_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.023590
Chromosome:chromosome 16
Location:2999211
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g663850 SSS5 Soluble starch synthase V; (1 of 2) PTHR12526//PTHR12526:SF304 - GLYCOSYLTRANSFERASE // STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGGGCGCTGCTCCTGGCTGCGGCCGCCCGGGCTCAACGTGGTGCACATC
Internal bar code:AAGGATGACGGAATATCATTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3742
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:75
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:75

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTCGATGAAGTAGACGGG
Suggested primer 2:ATCTCGGGGTAACAGGAGCT