Insertion junction: CLIP2.023596_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.023596
Chromosome:chromosome 1
Location:1522023
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g008150 RPK1 RNA-polymerase-subunit kinase; (1 of 1) IPR000719//IPR001932//IPR002290//IPR011009 - Protein kinase domain // PPM-type phosphatase domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCGAATCATCAGCATCATCAGCATTAGGAGCAGCATCAATATCGGGAG
Internal bar code:CATGTAGTCAGTCTGGATTACG

Confirmation - LEAP-Seq

LEAP-Seq distance:440
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGCCGTCTTCCAACAAGC
Suggested primer 2:CTGATCCTGACGTCGGATGG