Insertion junction: CLIP2.024030_4

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.024030
Chromosome:chromosome 17
Location:6131061
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g802133 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCTTGGCTGCCGCCACGGCTCTCCACCGCCTCTTCTTCACGCGCCACGA
Internal bar code:GAAAGTAGTTGACAGGGATAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2072
LEAP-Seq percent confirming:90.4762
LEAP-Seq n confirming:38
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GACGCCCACAAATGCAAACT
Suggested primer 2:AGACGAGCCACACCCAAAAA